| Genome Alignment (GENOA) input, process and ouput data | ||||||||||||
| Feature | Analysis | Genome | Statistics | Comment | ||||||||
| Ensemble gene | Ensembl | Human | 22,184 | |||||||||
| cDNA sequence | GenBank 139 | Human | 114,891 | |||||||||
| cDNA with annotated protein coding region | GenBank 139 CDS | Human | 69,904 | |||||||||
| EST sequence | dbEST | Human | 5,471,624 | |||||||||
| Length distribution | ||||||||||||
| cDNA with annotated protein coding region | Average | Human | 1,314 bp | |||||||||
| Variance | Human | 1,314 bp | ||||||||||
| Median | Human | 1,314 bp | ||||||||||
| cDNA sequence | Average | Human | 2,193 bp | |||||||||
| Variance | Human | 1,438 bp | ||||||||||
| Median | Human | 1,965 bp | ||||||||||
| EST sequence | Average | Human | 540 bp | |||||||||
| Variance | Human | 272 bp | ||||||||||
| Median | Human | 481 bp | ||||||||||
| Initial BLAST analysis | ||||||||||||
| Ensemble gene | All genes | Human | 19,258 | |||||||||
| cDNA sequence | All genes | Human | 175,957 | all hits | ||||||||
| All unique genes | Human | 107,061 | unique hits | |||||||||
| EST | Human | 4,256,037 | all hits | |||||||||
| Human | 3,200,767 | unique hits | ||||||||||
| Spliced-alignment analysis | ||||||||||||
| Ensemble gene | Human | 18,814 | all alignments | |||||||||
| cDNA sequence | Human | 149,288 | all alignmnets | |||||||||
| Human | 106,247 | unique alignments | ||||||||||
| Human | 64,871 | intronless alignments | ||||||||||
| Human | 5,113 | all certain? | ||||||||||
| Human | ||||||||||||
| Human | 79 | maximum intron size | ||||||||||
| EST sequence | First exon | Human | 386,595 | all alignments | ||||||||
| First exon | Human | 325,272 | unique alignments | |||||||||
| Last exon | Human | 475,295 | all alignments | |||||||||
| Last exon | Human | 447,436 | unique alignments | |||||||||
| First and last exons | Human | 861,890 | all alignments | |||||||||
| First and last exons | Human | 740,877 | unique alignments | |||||||||
| Human | 1,000,382 | |||||||||||
| Human | 935,495 | genomicseq-est/ files | ||||||||||
| Single and multi-cDNA/EST gene cluster | ||||||||||||
| Ensemble gene | Human | 18,040 | multi-cDNA | |||||||||
| Human | 2,166 | single-cDNA | ||||||||||
| cDNA sequence | Human | 77,746 | all multi-cDNAll | |||||||||
| Human | 76,523 | unique multi-cDNA | ||||||||||
| Human | 3,189 | sall single-cDNA | ||||||||||
| Human | 3,083 | unique single-cDNA | ||||||||||
| EST sequence | Human | 964,073 | all multi-EST | |||||||||
| Human | 923,372 | unique multi-EST | ||||||||||
| Ensemble gene | Mouse | 13,136 | multi-cDNA | |||||||||
| Mouse | 1,162 | single-cDNA | ||||||||||
| Ensemble gene | Mouse | 26,410 | all multi-cDNA | |||||||||
| Mouse | 26,279 | unique multi-cDNA | ||||||||||
| Mouse | 1,691 | all single-cDNA | ||||||||||
| Mouse | 1,162 | unique single-cDNA | ||||||||||
| EST sequence | Mouse | 747,017 | all multi-EST | |||||||||
| Mouse | 720,607 | unique multi-EST | ||||||||||
| Transcripts coverge per gene cluster | ||||||||||||
| Ensemble gene | Average | Human | 0.5 | single-cDNA with CDS | ||||||||
| Variance | Human | 0.5 | single-cDNA with CDS | |||||||||
| Median | Human | 1 | single-cDNA with CDS | |||||||||
| Average | Human | 3.2 | multi-cDNA with CDS | |||||||||
| Variance | Human | 3.3 | multi-cDNA with CDS | |||||||||
| Median | Human | 3 | multi-cDNA with CDS | |||||||||
| Average | Human | 1.5 | single-cDNA | |||||||||
| Variance | Human | 1.1 | single-cDNA | |||||||||
| Median | Human | 1 | single-cDNA | |||||||||
| Average | Human | 4.3 | multi-cDNA | |||||||||
| Variance | Human | 3.9 | multi-cDNA | |||||||||
| Median | Human | 1 | multi-cDNA | |||||||||
| Average | Human | 53.4 | multi-EST | |||||||||
| Variance | Human | 103.4 | multi-EST | |||||||||
| Median | Human | 21 | multi-EST | |||||||||
| Ensemble gene | Average | Mouse | 0.8 | single-cDNA with CDS | ||||||||
| Variance | Mouse | 0.4 | single-cDNA with CDS | |||||||||
| Median | Mouse | 1 | single-cDNA with CDS | |||||||||
| Average | Mouse | 1.8 | multi-cDNA with CDS | |||||||||
| Variance | Mouse | 1.4 | multi-cDNA with CDS | |||||||||
| Median | Mouse | 1 | multi-cDNA with CDS | |||||||||
| Average | Mouse | 1.5 | single-cDNA | |||||||||
| Variance | Mouse | 0.9 | single-cDNA | |||||||||
| Median | Mouse | 1 | single-cDNA | |||||||||
| Average | Mouse | 2 | multi-cDNA | |||||||||
| Variance | Mouse | 1.5 | multi-cDNA | |||||||||
| Median | Mouse | 2 | multi-cDNA | |||||||||
| Average | Mouse | 54.9 | multi-EST | |||||||||
| Variance | Mouse | 88.5 | multi-EST | |||||||||
| Median | Mouse | 1 | multi-EST | |||||||||